RERUN_LOG.txt -- output of  sh run_quick.sh <python>  (AMR-103-0016)

Run on 10 October 2026 from an extracted copy of the archive (before this log was added), with the
interpreter of ENVIRONMENT.txt (Python 3.12.14, regina 7.4.1, snappy 3.3.2, spherogram 2.4.1,
database_knotinfo 2026.10.5, sympy 1.14.0), one process, nice -n 10.  Duration: 35 minutes.
The first and the last two lines were added by the calling shell (times in UTC, exit status).

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start 2026-10-10T17:38:24Z
== writing_stage/ (the exact program of the note)
passed                 check_paper.py (TOTAL failures: 0)
identical              writing_stage/check_paper_output.txt
== original/ (programs with which the results were first obtained; working copy in rerun_out/original)
identical              original normalize.out
identical              original byproduct_check.out
identical              original jones_check.out
identical              original extra_checks.out
identical up to times  original families_structured.out
== verification_run_A/
exported               census of prime alternating links up to 13 crossings (17101 diagrams, from SnapPy)
identical              A conventions_test.out
identical              A validate_tools.out
identical up to times  A cenA_2_9.summary.json (census, 2 to 9 crossings)
identical up to times  A cenA_10_12_c0.summary.json (census, 10 to 12 crossings, part 0 of 6)
identical up to times  A cenA_10_12_c1.summary.json (census, 10 to 12 crossings, part 1 of 6)
identical up to times  A cenA_10_12_c2.summary.json (census, 10 to 12 crossings, part 2 of 6)
identical up to times  A cenA_10_12_c3.summary.json (census, 10 to 12 crossings, part 3 of 6)
identical up to times  A cenA_10_12_c4.summary.json (census, 10 to 12 crossings, part 4 of 6)
identical up to times  A cenA_10_12_c5.summary.json (census, 10 to 12 crossings, part 5 of 6)
identical up to times  A census_le12_summary.txt (all 19834 oriented diagrams up to 12 crossings)
identical              A families_sums.out
identical              A families_split.out
identical              A families_nonreduced.out
identical              A families_adequate.out
identical              A altbraid_test.out
identical              A lemma6_test.out
identical              A traczyk_thm1_test.out
identical              A kauffman_test_8.out
identical              A kauffman_test_10.out
identical              A tables_qp_check.out
identical up to the table look-up  A corC_small.out
identical up to the table look-up  A corC_sqp4k5.out
identical up to the table look-up  A corC_sqp5.out
identical up to the table look-up  A corC_qp3.out
identical up to the table look-up  A corC_qp4.out
identical up to the table look-up  A corC_long.out
== verification_run_B/ (working copy of the programs in rerun_out/B/programs)
identical              B calibrate.out
identical up to times  B composite_split.out
identical up to times  B bandmoves.out
identical              B sensitivity.out
identical up to times  B tables_K12.out
identical up to times  B census_K12_L11.out (8186 oriented diagrams, every invariant by two methods)
identical up to times  B census_K12_L12.out (19834 oriented diagrams, every invariant by two methods)
identical up to times  B census_K14_L14_nosecond.out (all 296622 oriented diagrams up to 14 crossings)
built                  dictionary of (HOMFLY, signature) of the census up to 14 crossings (206777 polynomials)
      alternating (all positive) / undecided: recorded 7171 / 299, now 7177 / 293
identical up to alternating/undecided  B qp_test.out (12770 random quasipositive words)
identical up to times  B qp_control.out
== done: 0 comparison(s) failed
exit status 0
end 2026-10-10T18:13:26Z
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Addendum (10 October 2026, 18:19 UTC).  After this run, the wording of one output label and of
three comments or messages in verification_run_A/programs/conventions_test.py was changed (see
README.md, Notes), and the recorded output verification_run_A/outputs/conventions_test.out was
produced again with the reworded program.  It differs from the record compared above in 22 lines,
all of them this label.  The reworded program was then run once more from a copy of the final
folder and compared with the new record, and writing_stage/check_paper.py likewise:

identical              A conventions_test.out
passed                 check_paper.py (TOTAL failures: 0)
identical              writing_stage/check_paper_output.txt

The run above left a folder __pycache__ in verification_run_A/programs: the command for
tables_qp_check.py uses the option -I of Python, which switches off the environment variable by which
run_quick.sh suppresses such folders.  The option -B was therefore added to this one command line of
run_quick.sh; the command was run again from a copy of the final folder (18:22 UTC), and nothing was
written outside rerun_out/:

identical              A tables_qp_check.out

No other program or recorded output was changed after the run above; README.md, two lines of
run_quick.sh (the comment on the duration, the option -B) and this log were edited.
